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YS

Yana Safonova

Pennsylvania State University US

0000-0002-9634-4216

76

Publications

1,481

Citations

20

H-Index

30

i10-Index

10.95

2yr Mean Cite

-

Cite/Paper

Data combined from OpenAlex . OA = OpenAlex S2 = Semantic Scholar

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Publication & Citation Trends

Most Cited Works

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding OA

Rahmad Akbar, Philippe A. Robert, Milena Pavlović, Jeliazko R. Jeliazkov, Igor Snapkov +10 more

Cell Reports 2021

184

Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease OA

Pan-Pan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wanting He +27 more

Immunity 2023

161

Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire OA

Oscar L. Rodriguez, Yana Safonova, Catherine A. Silver, Kaitlyn Shields, William S. Gibson +8 more

Nature Communications 2023

121

Complete sequencing of ape genomes OA

DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon +95 more

Nature 2025

112

dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes OA

Yana Safonova, Anton Bankevich, Pavel A. Pevzner

Journal of Computational Biology 2015

81

Publications

76 total

Complete sequencing of ape genomes PDF

DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon et al. - Nature, 2025

Cited by 112 OpenAlex

Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease PDF

Pan-Pan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wanting He et al. - Immunity, 2023

Cited by 161 OpenAlex

Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire PDF

Oscar L. Rodriguez, Yana Safonova, Catherine A. Silver, Kaitlyn Shields, William S. Gibson et al. - Nature Communications, 2023

Cited by 121 OpenAlex

Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses PDF

Wanting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V. Tse et al. - Nature Immunology, 2022

Cited by 62 OpenAlex

Gene prediction in the immunoglobulin loci PDF

Vikram Sirupurapu, Yana Safonova, Pavel A. Pevzner - Genome Research, 2022

Cited by 38 OpenAlex

Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques PDF

Wanting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song et al. - Science Translational Medicine, 2022

Cited by 33 OpenAlex

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding PDF

Rahmad Akbar, Philippe A. Robert, Milena Pavlović, Jeliazko R. Jeliazkov, Igor Snapkov et al. - Cell Reports, 2021

Cited by 184 OpenAlex

Diversity in immunogenomics: the value and the challenge PDF

Kerui Peng, Yana Safonova, Mikhail Shugay, Alice B. Popejoy, Oscar L. Rodriguez et al. - Nature Methods, 2021

Cited by 76 OpenAlex

Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells PDF

Jeong Hyun Lee, Laura Toy, Justin T. Kos, Yana Safonova, William R. Schief et al. - npj Vaccines, 2021

Cited by 70 OpenAlex

<i>De novo</i> Inference of Diversity Genes and Analysis of Non-canonical V(DD)J Recombination in Immunoglobulins.

Yana Safonova, Pavel A. Pevzner - PubMed, 2019

Cited by 36 OpenAlex

Research Topics

Monoclonal and Polyclonal Antibodies Research (30) T-cell and B-cell Immunology (27) Glycosylation and Glycoproteins Research (15) Immune Cell Function and Interaction (14) SARS-CoV-2 and COVID-19 Research (10)

Frequent Co-Authors

PA

Pavel A. Pevzner

6 joint publications

PA

Pan-Pan Zhou

3 joint publications

ME

Meng Yuan

3 joint publications

WA

Wanting He

3 joint publications

NA

Nathan Beutler

3 joint publications

FA

Fabio Anzanello

3 joint publications

Affiliations

Scripps Research Institute

US 2025 - 2025

Pennsylvania State University

US 2026 - 2023

Saint Petersburg Academic University

RU 2015 - 2014

University of Louisville

US 2022 - 2021

Johns Hopkins University

US 2025 - 2021

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