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Joanna W. Pylvänäinen

Åbo Akademi University FI

ORCID iD 0000-0002-3540-5150
71
Publications
1,557
Citations
11
H-Index
11
i10-Index
6.6
2yr Mean Cite
-
Cite/Paper
Data combined from OpenAlex + Semantic Scholar. OA = OpenAlex S2 = Semantic Scholar
Verify on Google Scholar

Publication & Citation Trends

Most Cited Works

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines OA
Dmitry Ershov, Minh-Son Phan, Joanna W. Pylvänäinen, Stéphane Rigaud, Laure Le Blanc +8 more
Nature Methods 2022
1,177
Bringing TrackMate into the era of machine-learning and deep-learning OA
Dmitry Ershov, Minh-Son Phan, Joanna W. Pylvänäinen, Stéphane Rigaud, Laure Le Blanc +8 more
bioRxiv (Cold Spring Harbor Laboratory) 2021
100
Live-cell imaging in the deep learning era OA
Joanna W. Pylvänäinen, Estibaliz Gómez‐de‐Mariscal, Ricardo Henriques, Guillaume Jacquemet
Current Opinion in Cell Biology 2023
71
<i>UBR5</i> Is Coamplified with <i>MYC</i> in Breast Tumors and Encodes an Ubiquitin Ligase That Limits MYC-Dependent Apoptosis OA
Xi Qiao, Ying Liu, Maria Llamazares Prada, Aravind K. Mohan, Abhishekh Gupta +14 more
Cancer Research 2020
55
Fast4DReg – fast registration of 4D microscopy datasets OA
Joanna W. Pylvänäinen, Romain F. Laine, Bruno M. Saraiva, Sujan Ghimire, Gautier Follain +2 more
Journal of Cell Science 2023
32

Publications

71 total

Fast label-free live imaging with FlowVision reveals key principles of cancer cell arrest on endothelial monolayers

Gautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Iván Hidalgo-Cenalmor - EMBO Journal, 2026
Cited by 2 Semantic Scholar

Scaffold protein SHANK3 regulates endothelial cell motility and tissue mechanics

Megan R. Chastney, A. Pink, Jouni Härkönen, Gautier Follain, Vanessa Stüve - bioRxiv, 2026
Cited by 0 Semantic Scholar

Practical recommendations for developing software for life science applications PDF

Joanna W. Pylvänäinen, Guillaume Jacquemet, Stefania Marcotti - Journal of Cell Science, 2025
Cited by 3 OpenAlex

Practical considerations for data exploration in quantitative cell biology PDF

Joanna W. Pylvänäinen, Hanna Grobe, Guillaume Jacquemet - Journal of Cell Science, 2025
Cited by 3 OpenAlex

Filopodome proteomics identifies CCT8 as a MYO10 interactor critical for filopodia functions

Ana Popović, Neil J. Ball, Mitro Miihkinen, Omkar Joshi, Michal Dibus - bioRxiv, 2025
Cited by 1 Semantic Scholar

DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible PDF

Iván Hidalgo-Cenalmor, Joanna W. Pylvänäinen, Mariana Ferreira, Craig Russell, Alon Saguy et al. - Nature Methods, 2024
Cited by 22 OpenAlex

Recognising the importance and impact of Imaging Scientists: Global guidelines for establishing career paths within core facilities PDF

Graham Wright, Kerry Thompson, Yara Reis, Johanna Bischof, Philip E. Hockberger et al. - Journal of Microscopy, 2024
Cited by 21 OpenAlex

Harnessing artificial intelligence to reduce phototoxicity in live imaging PDF

Estibaliz Gómez‐de‐Mariscal, Mario Del Rosario, Joanna W. Pylvänäinen, Guillaume Jacquemet, Ricardo Henriques - Journal of Cell Science, 2024
Cited by 17 OpenAlex

CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data PDF

Estibaliz Gómez‐de‐Mariscal, Hanna Grobe, Joanna W. Pylvänäinen, Laura Xénard, Ricardo Henriques et al. - PLoS Biology, 2024
Cited by 15 OpenAlex

The crucial role of bioimage analysts in scientific research and publication PDF

Beth A. Cimini, Peter Bankhead, Rocco D’Antuono, Elnaz Fazeli, Julia Fernández-Rodrı́guez et al. - Journal of Cell Science, 2024
Cited by 12 OpenAlex

Research Topics

Cell Image Analysis Techniques (22) Ubiquitin and proteasome pathways (14) Advanced Fluorescence Microscopy Techniques (8) Image Processing Techniques and Applications (8) Single-cell and spatial transcriptomics (6)

Frequent Co-Authors

GU
Guillaume Jacquemet
12 joint publications
RI
Ricardo Henriques
7 joint publications
ES
Estibaliz Gómez‐de‐Mariscal
6 joint publications
JE
Jean-Yves Tinévez
4 joint publications
JA
James R. W. Conway
3 joint publications
RO
Romain F. Laine
3 joint publications

Affiliations

Åbo Akademi University
FI 2026 - 2019
University of Turku
FI 2025 - 2019
Turku Centre for Computer Science
FI 2025 - 2021
Turku Centre for Biotechnology
FI 2021 - 2021

External Profiles

OpenAlex Profile Semantic Scholar Profile ORCID Profile Google Scholar

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