Patroklos Samaras

ActionAid US

0000-0001-6042-1585

Publications

3,744

Citations

H-Index

i10-Index

13.33

2yr Mean Cite

Cite/Paper

Data combined from OpenAlex + Semantic Scholar. OA = OpenAlex S2 = Semantic Scholar

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Publication & Citation Trends

Most Cited Works

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning OA

Siegfried Gessulat, Tobias Schmidt, Daniel P. Zolg, Patroklos Samaras, Karsten Schnatbaum +10 more

Nature Methods 2019

955

Mass-spectrometry-based draft of the Arabidopsis proteome OA

Julia Mergner, Martin Frejno, Markus List, Michael Papacek, Xia Chen +27 more

Nature 2020

531

The emerging landscape of single-molecule protein sequencing technologies OA

Javier A. Alfaro, Peggy R. Bohländer, Mingjie Dai, Mike Filius, Cecil J. Howard +38 more

Nature Methods 2021

355

Meltome atlas—thermal proteome stability across the tree of life OA

Anna Jarząb, Nils Kurzawa, Thomas A. Hopf, Matthias Moerch, Jana Zecha +20 more

Nature Methods 2020

287

ProteomicsDB OA

Tobias Schmidt, Patroklos Samaras, Martin Frejno, Siegfried Gessulat, Maximilian Barnert +7 more

Nucleic Acids Research 2017

231

Publications

30 total

Unifying the analysis of bottom-up proteomics data with CHIMERYS OA

Martin Frejno, Michelle T. Berger, Johanna Tüshaus, Alexander Hogrebe, F. Seefried - Nature Methods, 2025

Cited by 18 Semantic Scholar

A Scalable, Web-Based Platform for Proteomics Data Processing, Result Storage and Analysis OA

Markus Schneider, D. Zolg, Patroklos Samaras, Samia Ben Fredj, Dulguun Bold - Journal of Proteome Research, 2025

Cited by 4 Semantic Scholar

Decrypting drug actions and protein modifications by dose- and time-resolved proteomics PDF

Jana Zecha, Florian Bayer, Svenja Wiechmann, Julia Rechenberger, Nicola Berner et al. - Science, 2023

Cited by 100 OpenAlex

Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors PDF

Maria Reinecke, P. Brear, Larsen Vornholz, Benedict‐Tilman Berger, Florian Seefried et al. - Nature Chemical Biology, 2023

Cited by 77 OpenAlex

Mass spectrometry-based draft of the mouse proteome PDF

Piero Giansanti, Patroklos Samaras, Yangyang Bian, Chen Meng, Andrea Coluccio et al. - Nature Methods, 2022

Cited by 74 OpenAlex

High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development. OA

J. Krumm, K. Sekine, Patroklos Samaras, Agnieska Brazovskaja, M. Breunig - Cell Reports, 2022

Cited by 12 Semantic Scholar

Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups OA

Matthew The, Patroklos Samaras, B. Kuster, Mathias Wilhelm - Molecular & Cellular Proteomics, 2022

Cited by 32 Semantic Scholar

The emerging landscape of single-molecule protein sequencing technologies PDF

Javier A. Alfaro, Peggy R. Bohländer, Mingjie Dai, Mike Filius, Cecil J. Howard et al. - Nature Methods, 2021

Cited by 355 OpenAlex

Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics PDF

Mathias Wilhelm, Daniel P. Zolg, Michael Graber, Siegfried Gessulat, Tobias Schmidt et al. - Nature Communications, 2021

Cited by 190 OpenAlex

A proteomics sample metadata representation for multiomics integration and big data analysis PDF

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng et al. - Nature Communications, 2021

Cited by 124 OpenAlex

Research Topics

Advanced Proteomics Techniques and Applications (21) Mass Spectrometry Techniques and Applications (8) Metabolomics and Mass Spectrometry Studies (8) Genomics and Phylogenetic Studies (5) Scientific Computing and Data Management (4)

Frequent Co-Authors

Mathias Wilhelm

15 joint publications

Bernhard Küster

14 joint publications

Tobias Schmidt

7 joint publications

Martin Frejno

6 joint publications

Jana Zecha

5 joint publications

Siegfried Gessulat

4 joint publications

Affiliations

ActionAid

US 2025 - 2024

Aristotle University of Thessaloniki

GR 2017 - 2014

MSD (Germany)

DE 2024 - 2024

Isotopen Technologien München (Germany)

DE 2025 - 2025

Technical University of Munich

DE 2023 - 2017

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Patroklos Samaras

Publication & Citation Trends

Most Cited Works

Publications

Unifying the analysis of bottom-up proteomics data with CHIMERYS OA

A Scalable, Web-Based Platform for Proteomics Data Processing, Result Storage and Analysis OA

Decrypting drug actions and protein modifications by dose- and time-resolved proteomics PDF

Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors PDF

Mass spectrometry-based draft of the mouse proteome PDF

High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development. OA

Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups OA

The emerging landscape of single-molecule protein sequencing technologies PDF

Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics PDF

A proteomics sample metadata representation for multiomics integration and big data analysis PDF

Research Topics

Frequent Co-Authors

Affiliations

External Profiles

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