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YC

Yu Chen

Independent Researcher

0000-0003-3326-9068

177

Publications

2,880

Citations

21

H-Index

27

i10-Index

7.24

2yr Mean Cite

-

Cite/Paper

Data combined from OpenAlex . OA = OpenAlex S2 = Semantic Scholar

Verify on Google Scholar

Publication & Citation Trends

Most Cited Works

Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence

Yu Chen, Tom Diethe, Peter Flach

National Conference on Artificial Intelligence 2016

682

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction OA

Feiran Li, Le Yuan, Hongzhong Lu, Gang Li, Yu Chen +3 more

Nature Catalysis 2022

399

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism OA

Jie Zhang, Søren D. Petersen, Tijana Radivojević, Andrés Ramirez, Andrés Pérez-Manríquez +9 more

Nature Communications 2020

271

Engineering cofactor supply and recycling to drive phenolic acid biosynthesis in yeast

Ruibing Chen, Jiaoqi Gao, Wei Yu, Xianghui Chen, Xiaoxin Zhai +3 more

Nature Chemical Biology 2022

232

Energy metabolism controls phenotypes by protein efficiency and allocation OA

Yu Chen, Jens Nielsen

Proceedings of the National Academy of Sciences 2019

163

Publications

175 total

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel, Mihail Anton, Iván Domenzain et al. - Nature Protocols, 2024

Cited by 87 OpenAlex

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction PDF

Feiran Li, Le Yuan, Hongzhong Lu, Gang Li, Yu Chen et al. - Nature Catalysis, 2022

Cited by 399 OpenAlex

Engineering cofactor supply and recycling to drive phenolic acid biosynthesis in yeast

Ruibing Chen, Jiaoqi Gao, Wei Yu, Xianghui Chen, Xiaoxin Zhai et al. - Nature Chemical Biology, 2022

Cited by 232 OpenAlex

Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation PDF

Jianye Xia, Benjamín J. Sánchez, Yu Chen, Kate Campbell, Sergo Kasvandik et al. - Nature Communications, 2022

Cited by 88 OpenAlex

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints PDF

Feiran Li, Yu Chen, Qi Qi, Yanyan Wang, Le Yuan et al. - Nature Communications, 2022

Cited by 75 OpenAlex

GotEnzymes: an extensive database of enzyme parameter predictions PDF

Feiran Li, Yu Chen, Mihail Anton, Jens Nielsen - Nucleic Acids Research, 2022

Cited by 74 OpenAlex

Genome-scale modeling of yeast metabolism: retrospectives and perspectives PDF

Yu Chen, Feiran Li, Jens Nielsen - FEMS Yeast Research, 2022

Cited by 62 OpenAlex

Proteome constraints reveal targets for improving microbial fitness in nutrient‐rich environments PDF

Yu Chen, Eunice van Pelt‐KleinJan, Berdien van Olst, Sieze Douwenga, Sjef Boeren et al. - Molecular Systems Biology, 2021

Cited by 78 OpenAlex

Engineering yeast metabolism for the discovery and production of polyamines and polyamine analogues

Jiufu Qin, Anastasia Krivoruchko, Boyang Ji, Yu Chen, Mette Kristensen et al. - Nature Catalysis, 2021

Cited by 56 OpenAlex

Mathematical modeling of proteome constraints within metabolism PDF

Yu Chen, Jens Nielsen - Current Opinion in Systems Biology, 2021

Cited by 49 OpenAlex

Research Topics

Microbial Metabolic Engineering and Bioproduction (34) Biofuel production and bioconversion (15) Bioinformatics and Genomic Networks (12) Fungal and yeast genetics research (10) Liver Disease Diagnosis and Treatment (7)

Frequent Co-Authors

JE

Jens Nielsen

11 joint publications

FE

Feiran Li

5 joint publications

LE

Le Yuan

3 joint publications

ED

Eduard J. Kerkhoven

3 joint publications

BE

Benjamín J. Sánchez

2 joint publications

JA

Jay D. Keasling

2 joint publications

Affiliations

Tianjin University of Commerce

CN 2007 - 2007

Vidant Medical Center

US 1995 - 1995

Nanchang University

CN 2025 - 2025

East China University of Science and Technology

CN 2022 - 2020

Chongqing University

CN 2005 - 2005

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